EC 3.1.21.4 - type II site- specific deoxyribonuclease

3D structures of EC 3.1.21.4 - type II site-specific deoxyribonuclease in Protein Data Bank

updated: 6 January 2022, 2:15

1. 1az0: Ecorv Endonuclease/dna Complex
2. 1az3: Ecorv Endonuclease, Unliganded, Form B
3. 1az4: Ecorv Endonuclease, Unliganded, Form B, T93A Mutant
4. 1b94: Restriction Endonuclease Ecorv with Calcium
5. 1b95: Analysis of a Mutational Hot-spot in The Ecorv Restriction Endonuclease: a Catalytic Role for a Main Chain Carbonyl Group
6. 1b96: Analysis of a Mutational Hot-spot in The Ecorv Restriction Endonuclease: a Catalytic Role for a Main Chain Carbonyl Group
7. 1b97: Analysis of a Mutational Hot-spot in The Ecorv Restriction Endonuclease: a Catalytic Role for a Main Chain Carbonyl Group
8. 1bam: Structure of Restriction Endonuclease Bamhi Phased at 1.95 Angstroms Resolution by Mad Analysis
9. 1bgb: Ecorv Endonuclease Complex with 5'-cgggatatccc Dna
10. 1bhm: Restriction Endonuclease Bamhi Complex with Dna
11. 1bss: ECORV-T93A/DNA/CA2+
12. 1bsu: Structural and Energetic Origins of Indirect Readout in Site-specific Dna Cleavage by a Restriction Endonuclease
13. 1bua: Structural and Energetic Origins of Indirect Readout in Site-specific Dna Cleavage by a Restriction Endonuclease
14. 1cfr: Crystal Structure of Citrobacter Freundii Restriction Endonuclease CFR10I at 2.15 Angstroms Resolution.
15. 1d02: Crystal Structure of Muni Restriction Endonuclease in Complex with Cognate Dna
16. 1dc1: Restriction Enzyme Bsobi/dna Complex Structure: Encirclement of The Dna and Histidine-catalyzed Hydrolysis within a Canonical Restriction Enzyme Fold
17. 1dmu: Crystal Structure of The Restriction Endonuclease Bgli (e.c.3.1.21.4) Bound to Its Dna Recognition Sequence
18. 1eo3: Inhibition of Ecorv Endonuclease by Deoxyribo-3'-s- Phosphorothiolates: a High Resolution X-ray Crystallographic Study
19. 1eo4: Ecorv Bound to Mn2+ and Cognate Dna Containing a 3's Substition at The Cleavage Site
20. 1eon: Ecorv Bound to 3'-s-phosphorothiolate Dna and Ca2+
21. 1eoo: Ecorv Bound to Cognate Dna
22. 1eop: Ecorv Bound to Cognate Dna
23. 1es8: Crystal Structure of Free Bglii
24. 1esg: Restriction Endonuclease Bamhi Bound to a Non-specific Dna.
25. 1ev7: Crystal Structure of Dna Restriction Endonuclease Naei
26. 1eyu: High Resolution Structure of The Pvuii Endonculease/cognate Dna Complex at Ph 4.6
27. 1f0o: Pvuii Endonuclease/cognate Dna Complex (glutaraldehyde- Crosslinked Crystal) at Ph 7.5 with Two Calcium Ions at Each Active Site
28. 1fiu: Tetrameric Restriction Endonuclease Ngomiv in Complex with Cleaved Dna
29. 1h56: Structural and Biochemical Characterization of a New Magnesium Ion Binding Site near Tyr94 in The Restriction Endonuclease Pvuii
30. 1iaw: Crystal Structure of Naei Complexed with 17mer Dna
31. 1k0z: Crystal Structure of The Pvuii Endonuclease with Pr3+ and So4 Ions Bound in The Active Site at 2.05a.
32. 1kc6: Hincii Bound to Cognate Dna
33. 1knv: BSE634I Restriction Endonuclease
34. 3nic: Dna Binding and Cleavage by The Giy-yig Endonuclease R.ECO29KI Inactive Variant Y49F
35. 3n7b: Sgrai Bound to Secondary Site Dna and Ca(ii)
36. 3n78: Sgrai Bound to Secondary Site Dna and Mg(ii)
37. 3mx4: Dna Binding and Cleavage by The Giy-yig Endonuclease R.ECO29KI Inactive Variant E142Q
38. 3mx1: The Structure of Giy-yig Endonuclease R.ECO29KI
39. 3mqy: Sgrai with Cleaved Dna and Magnesium Bound
40. 3mq6: Domain Swapped Sgrai with Dna and Calcium Bound
41. 1na6: Crystal Structure of Restriction Endonuclease Ecorii Mutant R88A
42. 1ni0: Structure of The Y94F Mutant of The Restriction Endonuclease Pvuii
43. 3ksk: Crystal Structure of Single Chain Pvuii
44. 1pvu: The Crystal Structure of Pvuii Endonuclease Reveals Extensive Structural Homologies to Ecorv
45. 1qc9: The Crystallographic Structure of Restriction Endonuclease Eco Ri at 3.3 a in The Absense of Dna
46. 3hqg: Crystal Structure of Restriction Endonuclease Ecorii Catalytic C- Terminal Domain in Complex with Cognate Dna
47. 3hqf: Crystal Structure of Restriction Endonuclease Ecorii N-terminal Effector-binding Domain in Complex with Cognate Dna
48. 1rv5: Complex of Ecorv Endonuclease with D(aaagat)/d(atctt)
49. 1rve: The Crystal Structure of Ecorv Endonuclease and of Its Complexes with Cognate and Non-cognate Dna Fragments
50. 1sa3: An Asymmetric Complex of Restriction Endonuclease Mspi on Its Palindromic Dna Recognition Site
51. 1sdo: Crystal Structure of Restriction Endonuclease Bstyi
52. 1stx: Structure of The K38A Mutant of Ecorv Bound to Cognate Dna and Mn2+
53. 1suz: The Structure of K92A Ecorv Bound to Cognate Dna and Mg2+
54. 1sx5: K38A Ecorv Bound to Cleaved Dna and Mn2+: P1 Crystal Form
55. 1sx8: Ecorv Bound to Cognate Dna and Mn2+
56. 3ebc: Structure of N141A Hincii with Cognate Dna
57. 3e45: Q138F Hincii Bound to Noncognate Dna (gtgcac) and Ca2+
58. 3e44: Q138F Hincii Bound to Cleaved Dna (gtt | Aac) and Mn2+
59. 3e43: Q138F Hincii Bound to Gttaac and Cocrystallized with 2.5 Mm Mgcl2
60. 3e42: Q138F Hincii Bound to Gtcgac and Ca2+ (cocrystallized)
61. 3e41: Q138F Hincii Bound to Gtcgac and 5 Mm Ca2+
62. 3e40: Q138F Hincii Bound to Gttaac and Cocrystallized with 5 Mm Ca2+
63. 3e3y: Q138F Hincii Bound to Gttaac and Cocrystallized with 5 Mm Ca2+
64. 1tw8: Hincii Bound to Ca2+ and Cognate Dna Gtcgac
65. 1tx3: Hincii Bound to Cognate Dna
66. 3dw9: Sgrai with Cognate Dna and Manganese Bound
67. 3dvo: Sgrai with Cognate Dna and Calcium Bound
68. 3dpg: Sgrai with Noncognate Dna Bound
69. 1vrr: Crystal Structure of The Restriction Endonuclease Bstyi Complex with Dna
70. 3bam: Restriction Endonuclease Bamhi Complex with Dna and Manganese Ions (post-reactive Complex)
71. 3a4k: Crystal Structural Analysis of Hindiii Restriction Endonuclease in Complex with Cognate Dna and Divalent Cations at 2.17 Angstrom Resolution
72. 1wtd: Crystal Structure of Type II Restrcition Endonuclease, ECOO109I Dna-free Form
73. 1wte: Crystal Structure of Type II Restrcition Endonuclease, ECOO109I Complexed with Cognate Dna
74. 1xhu: Hincii Bound to Cleaved, Cognate Dna Containing Gtcgac
75. 1xhv: Hincii Bound to Cleaved Cognate Dna Gtcgac and Mn2+
76. 1yfi: Crystal Structure of Restriction Endonuclease Mspi in Complex with Its Cognate Dna in P212121 Space Group
77. 1ynm: Crystal Structure of Restriction Endonuclease HINP1I
78. 2vla: Crystal Structure of Restriction Endonuclease Bpuji Recognition Domain in Complex with Cognate Dna
79. 2aud: Unliganded Hincii
80. 2b0d: Ecorv Restriction Endonuclease/gaattc/ca2+
81. 2b0e: Ecorv Restriction Endonuclease/gaautc/ca2+
82. 2bam: Restriction Endonuclease Bamhi Complex with Dna and Calcium Ions (pre-reactive Complex).
83. 2reu: Crystal Structure of The C-terminal of SAU3AI Fragment
84. 2c1l: Structure of The Bfii Restriction Endonuclease
85. 2pvi: Pvuii Endonuclease Complexed to an Iodinated Cognate Dna
86. 2p14: Crystal Structure of Small Subunit (R.BSPD6I2) of The Heterodimeric Restriction Endonuclease R.BSPD6I
87. 2oxv: Structure of The A138T Promiscuous Mutant of The Ecori Restriction Endonuclease Bound to Its Cognate Recognition Site.
88. 2e52: Crystal Structural Analysis of Hindiii Restriction Endonuclease in Complex with Cognate Dna at 2.0 Angstrom Resolution
89. 2ezv: Crystal Structure of Tetrameric Restriction Endonuclease Sfii Bound to Cognate Dna.
90. 2f03: Crystal Structure of Tetrameric Restriction Endonuclease Sfii in Complex with Cognate Dna (partial Bound Form)
91. 2fkc: Crystal Form I of Pre-reactive Complex of Restriction Endonuclease HINP1I with Cognate Dna and Calcium Ion
92. 2fkh: Crystal Form II of Pre-reactive Complex of Restriction Endonuclease HINP1I with Cognate Dna and Calcium Ions
93. 2fl3: Binary Complex of Restriction Endonuclease HINP1I with Cognate Dna
94. 2flc: Post-reactive Complex of Restriction Endonuclease HINP1I with Nicked Cognate Dna and Magnesium Ions
95. 2fok: Structure of Restriction Endonuclease Foki
96. 2ge5: Ecorv Restriction Endonuclease C-terminal Deletion Mutant/gatatc/ca2+
97. 2gie: Hincii Bound to Cognate Dna Gttaac
98. 2gig: Alteration of Sequence Specificity of The Type II Restriction Endonuclease Hincii through an Indirect Readout Mechanism
99. 2gih: Q138F Hincii Bound to Cognate Dna Gtcgac and Ca2+
100. 2gii: Q138F Hincii Bound to Cognate Dna Gttaac
101. 2gij: Q138F Hincii Bound to Cognate Dna Gttaac and Ca2+
102. 2ixs: Structure of Sdai Restriction Endonuclease
103. 6vi1: Structure of Fab4 Bound to P22 Terl(1-33)
104. 6qm2: Nlaiv Restriction Endonuclease
105. 4abt: Crystal Structure of Type Iif Restriction Endonuclease Ngomiv with Cognate Uncleaved Dna
106. 3v1z: Crystal Structure of Type Iif Restriction Endonuclease BSE634I with Cognate Dna
107. 3v20: Crystal Structure of Type Iif Restriction Endonuclease BSE634I with Cognate Dna
108. 3v21: Crystal Structure of Type Iif Restriction Endonuclease BSE634I with Cognate Dna
109. 4esj: Restriction Endonuclease Dpni in Complex with Target Dna
110. 6ekr: Crystal Structure of Type Iip Restriction Endonuclease KPN2I
111. 6eko: Crystal Structure of Type Iip Restriction Endonuclease Pfoi with Cognate Dna
112. 6ek1: Crystal Structure of Type Iip Restriction Endonuclease Pfoi
113. 3zi5: Crystal Structure of Restriction Endonuclease Bfii C- Terminal Recognition Domain in Complex with Cognate Dna
114. 4kyw: Restriction Endonuclease Dpni in Complex with Two Dna Molecules
115. 5o63: Crystal Structure of Ubalai Restriction Endonuclease B3 Domain Domain (mutant L24M L53M L95M) with Cognate Dna
116. 5hlk: Crystal Structure of The Ternary Ecorv-dna-lu Complex with Cleaved Dna Substrate.
117. 5f8a: Crystal Structure of The Ternary Ecorv-dna-lu Complex with Uncleaved Dna Substrate. Lanthanide Binding to Ecorv-dna Complex Inhibits Cleavage.
118. 5dwc: Crystal Structure of Restriction Endonuclease Agei
119. 5dwb: Crystal Structure of Specific Restriction Endonuclease Agei-dna Complex
120. 5dwa: Crystal Structure of Pre-specific Restriction Endonuclease Agei-dna Complex
121. 4rct: Crystal Structure of R-protein of Ngoavii Restriction Endonuclease
122. 4rd5: Crystal Structure of R.ngoavii Restriction Endonuclease B3 Domain with Cognate Dna
123. 4rdm: Crystal Structure of R.ngoavii Restriction Endonuclease B3 Domain with Cognate Dna
124. 4pxg: Crystal Structure of Typeii Restriction Enzyme SAU3AI
125. 3wvg: Time-resolved Crystal Structure of Hindiii with 0sec Soaking
126. 3wvh: Time-resolved Crystal Structure of Hindiii with 25sec Soaking
127. 3wvi: Time-resolved Crystal Structure of Hindiii with 40 Sec Soaking
128. 3wvk: Time-resolved Crystal Structure of Hindiii with 230sec Soaking
129. 3wvp: Time-resolved Crystal Structure of Hindiii with 60sec Soaking