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enzyme (lysozyme)

 
Enzymes
  Enzyme classes:
  EC 1: Oxidoreductases
  EC 2: Transferases
  EC 3: Hydrolases
    EC 3.1
    EC 3.2
    EC 3.3
    EC 3.4
      EC 3.4.1
      EC 3.4.2
      EC 3.4.3
      EC 3.4.4
      EC 3.4.11
      EC 3.4.12
      EC 3.4.13
      EC 3.4.14
      EC 3.4.15
      EC 3.4.16
        EC 3.4.16.1
        EC 3.4.16.2
        EC 3.4.16.3
        EC 3.4.16.4
        EC 3.4.16.5
        EC 3.4.16.6
      EC 3.4.17
      EC 3.4.18
      EC 3.4.19
      EC 3.4.21
      EC 3.4.22
      EC 3.4.23
      EC 3.4.24
      EC 3.4.25
      EC 3.4.99
    EC 3.5
    EC 3.6
    EC 3.7
    EC 3.8
    EC 3.9
    EC 3.10
    EC 3.11
    EC 3.12
    EC 3.13
  EC 4: Lyases
  EC 5: Isomerases
  EC 6: Ligases
  General information:
  Catalytic mechanism
  Enzyme kinetics
  Inhibitors
  Enzymes in industry

EC 3.4.16.4 - serine- type D- Ala- D- Ala carboxypeptidase



3D structures of EC 3.4.16.4 - serine-type D-Ala-D-Ala carboxypeptidase in Protein Data Bank

updated: 6 January 2022, 2:15

In total: 175 PDB structures of EC 3.4.16.4 - serine-type D-Ala-D-Ala carboxypeptidase:
  1. 1cef: Cefotaxime Complexed with The Streptomyces R61 Dd-peptidase
  2. 1ceg: Cephalothin Complexed with Dd-peptidase
  3. 1es2: S96A Mutant of Streptomyces K15 Dd-transpeptidase
  4. 1es3: C98A Mutant of Streptomyces K15 Dd-transpeptidase
  5. 1es4: C98N Mutant of Streptomyces K15 Dd-transpeptidase
  6. 1es5: S216A Mutant of Streptomyces K15 Dd-transpeptidase
  7. 1esi: R248L Mutant of Streptomyces K15 Dd-transpeptidase
  8. 1hd8: Crystal Structure of a Deacylation-defective Mutant of Penicillin-binding Protein 5 at 2.3 a Resolution
  9. 1hvb: Crystal Structure of Streptomyces R61 Dd-peptidase Complexed with a Novel Cephalosporin Analog of Cell Wall Peptidoglycan
  10. 1ikg: Michaelis Complex of Streptomyces R61 Dd-peptidase with a Specific Peptidoglycan Substrate Fragment
  11. 1iki: Complex of Streptomyces R61 Dd-peptidase with The Products of a Specific Peptidoglycan Substrate Fragment
  12. 1j9m: K38H Mutant of Streptomyces K15 Dd-transpeptidase
  13. 3pte: The Refined Crystallographic Structure of a Dd-peptidase Penicillin-target Enzyme at 1.6 a Resolution
  14. 1mpl: Crystal Structure of Phosphonate-inhibited D-ala-d-ala Peptidase Reveals an Analog of a Tetrahedral Transition State
  15. 3mfd: The Structure of The Beta-lactamase Superfamily Domain of D-alanyl-d- Alanine Carboxypeptidase from Bacillus Subtilis
  16. 1mwt: Structure of Penicillin G Acyl-penicillin Binding Protein 2a from Methicillin Resistant Staphylococcus Aureus Strain 27r at 2.45 a Resolution.
  17. 3lo7: Crystal Structure of Pbpa from Mycobacterium Tuberculosis
  18. 1nj4: Crystal Structure of a Deacylation-defective Mutant of Penicillin-binding Protein 5 at 1.9 a Resolution
  19. 1nzo: The Crystal Structure of Wild Type Penicillin-binding Protein 5 from E. Coli
  20. 1nzu: Wild-type Penicillin-binding Protein 5 from E. Coli Modified by Beta-mercaptoethanol
  21. 3itb: Crystal Structure of Penicillin-binding Protein 6 (pbp6) from E. Coli in Complex with a Substrate Fragment
  22. 3ita: Crystal Structure of Penicillin-binding Protein 6 (pbp6) from E. Coli in Acyl-enzyme Complex with Ampicillin
  23. 3it9: Crystal Structure of Penicillin-binding Protein 6 (pbp6) from E. Coli in Apo State
  24. 1pw1: Non-covalent Complex of Streptomyces R61 Dd-peptidase with a Highly Specific Penicillin
  25. 1pw8: Covalent Acyl Enzyme Complex of The R61 Dd-peptidase with a Highly Specific Cephalosporin
  26. 1pwc: Penicilloyl Acyl Enzyme Complex of The Streptomyces R61 Dd- Peptidase with Penicillin G
  27. 1pwd: Covalent Acyl Enzyme Complex of The Streptomyces R61 Dd- Peptidase with Cephalosporin C
  28. 1pwg: Covalent Penicilloyl Acyl Enzyme Complex of The Streptomyces R61 Dd-peptidase with a Highly Specific Penicillin
  29. 3hun: Crystal Structure of Penicillin Binding Protein 4 from Staphylococcus Aureus Col in Complex with Ampicillin
  30. 3hum: Crystal Structure of Penicillin Binding Protein 4 from Staphylococcus Aureus Col in Complex with Cefotaxime
  31. 1scw: Toward Better Antibiotics: Crystal Structure of R61 Dd- Peptidase Inhibited by a Novel Monocyclic Phosphate Inhibitor
  32. 1sde: Toward Better Antibiotics: Crystal Structure of D-ala-d-ala Peptidase Inhibited by a Novel Bicyclic Phosphate Inhibitor
  33. 1sdn: Crystal Structure of a Deacylation-defective Mutant of Penicillin-binding Protein 5 Modified by Mercury
  34. 1skf: Crystal Structure of The Streptomyces K15 Dd-transpeptidase
  35. 3eqv: Crystal Structure of Penicillin-binding Protein 2 from Neisseria Gonorrhoeae Containing Four Mutations Associated with Penicillin Resistance
  36. 3equ: Crystal Structure of Penicillin-binding Protein 2 from Neisseria Gonorrhoeae
  37. 3bec: Crystal Structure of E. Coli Penicillin-binding Protein 5 in Complex with a Peptide-mimetic Cephalosporin
  38. 3beb: Crystal Structure of E. Coli Penicillin-binding Protein 5 in Complex with a Peptide-mimetic Penicillin
  39. 1w5d: Crystal Structure of PBP4A from Bacillus Subtilis
  40. 1w79: Crystal Structure of The Dd-transpeptidase-carboxypeptidase from Actinomadura R39
  41. 1w8q: Crystal Structure of The Dd-transpeptidase-carboxypeptidase from Actinomadura R39
  42. 1w8y: Crystal Structure of The Nitrocefin Acyl-dd-peptidase from Actinomadura R39.
  43. 3a3j: Crystal Structures of Penicillin Binding Protein 5 from Haemophilus Influenzae
  44. 3a3i: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Haemophilus Influenzae, Complexed with Ampicillin (aix)
  45. 3a3f: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Haemophilus Influenzae,complexed with Novel Beta- Lactam (fmz)
  46. 3a3e: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Haemophilus Influenzae, Complexed with Novel Beta- Lactam (cmv)
  47. 3a3d: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Haemophilus Influenzae
  48. 1xp4: Crystal Structure of a Peptidoglycan Synthesis Regulatory Factor (pbp3) from Streptococcus Pneumoniae
  49. 2xdm: Crystal Structure of a Complex between Actinomadura R39 Dd Peptidase and a Peptidoglycan Mimetic Boronate Inhibitor
  50. 1yqs: Inhibition of The R61 Dd-peptidase by N-benzoyl-beta-sultam
  51. 2wke: Crystal Structure of The Actinomadura R39 Dd-peptidase Inhibited by 6-beta-iodopenicillanate.
  52. 1z6f: Crystal Structure of Penicillin-binding Protein 5 from E. Coli in Complex with a Boronic Acid Inhibitor
  53. 2vgk: Crystal Structure of Actinomadura R39 Dd-peptidase Complexed with a Peptidoglycan-mimetic Cephalosporin
  54. 2vgj: Crystal Structure of Actinomadura R39 Dd-peptidase Complexed with a Peptidoglycan-mimetic Cephalosporin
  55. 2v2f: Crystal Structure of PBP1A from Drug-resistant Strain 5204 from Streptococcus Pneumoniae
  56. 6yn0: Structure of E. Coli PBP1B with a Ftsn Peptide Activating Transglycosylase Activity
  57. 6azi: 1.75 Angstrom Resolution Crystal Structure of D-alanyl-d-alanine Endopeptidase from Enterobacter Cloacae in Complex with Covalently Bound Boronic Acid
  58. 6a6a: Vanyb in Complex with D-alanine
  59. 5zhw: Vanyb in Complex with D-alanine-d-alanine
  60. 5zhf: Structure of Vanyb Unbound
  61. 2ex2: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Escherichia Coli
  62. 2ex6: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Escherichia Coli, Complexed with Ampicillin
  63. 2ex8: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Escherichia Coli, Complexed with Penicillin-g
  64. 2ex9: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Escherichia Coli, Complexed with Penicillin-v
  65. 2exa: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Escherichia Coli, Complexed with Farom
  66. 2exb: Crystal Structure of Penicillin Binding Protein 4 (dacb) from Escherichia Coli, Complexed with Flomox
  67. 6r3x: Structure of Pseudomonas Aeruginosa Penicillin-binding Protein 3 (pbp3) in Complex with Piperacillin
  68. 2j7v: Structure of Pbp-a
  69. 2j8y: Structure of Pbp-a Acyl-enzyme Complex with Penicillin-g
  70. 2j9o: Structure of Pbp-a, L158E Mutant
  71. 2j9p: Crystal Structure of The Bacillus Subtilis PBP4A, and Its Complex with a Peptidoglycan Mimetic Peptide.
  72. 2jbf: Structure of Pbp-a, L158E Mutant. Acyl-enzyme Complex with Penicillin-g.
  73. 6syn: Crystal Structure of Y. Pestis Penicillin-binding Protein 3
  74. 6y6z: Structure of Pseudomonas Aeruginosa Penicillin-binding Protein 3 (pbp3) in Complex with Compound 1
  75. 6y6u: Structure of Pseudomonas Aeruginosa Penicillin-binding Protein 3 (pbp3) in Complex with Compound 6
  76. 2xk1: Crystal Structure of a Complex between Actinomadura R39 Dd- Peptidase and a Boronate Inhibitor
  77. 2xln: Crystal Structure of a Complex between Actinomadura R39 Dd-peptidase and a Boronate Inhibitor
  78. 6r40: Apo Structure of R504C Mutant of Pseudomonas Aeruginosa Penicillin- Binding Protein 3 (pbp3)
  79. 6r42: Structure of R504C Mutant of Pseudomonas Aeruginosa Penicillin-binding Protein 3 (pbp3) in Complex with Piperacillin
  80. 6vot: Crystal Structure of Pseudomonas Aerugonisa Pbp3 Complexed to Gamma- Lactam Yu253434
  81. 3mzd: Structure of Penicillin-binding Protein 5 from E. Coli: Cloxacillin Acyl-enzyme Complex
  82. 3mze: Structure of Penicillin-binding Protein 5 from E.coli: Cefoxitin Acyl- Enzyme Complex
  83. 3mzf: Structure of Penicillin-binding Protein 5 from E. Coli: Imipenem Acyl- Enzyme Complex
  84. 6vbm: Crystal Structure of a S310A Mutant of Pbp2 from Neisseria Gonorrhoeae
  85. 6vbl: Crystal Structure of The Transpeptidase Domain of Pbp2 from The Neisseria Gonorrhoeae Cephalosporin Decreased Susceptibility Strain 35/02
  86. 6vbd: Crystal Structure of Transpeptidase Domain of Pbp2 from Neisseria Gonorrhoeae Cephalosporin-resistant Strain H041 Acylated by Ceftriaxone
  87. 6vbc: Crystal Structure of Transpeptidase Domain of Pbp2 from Neisseria Gonorrhoeae Cephalosporin-resistant Strain H041
  88. 2y4a: Unexpected Tricovalent Binding Mode of Boronic Acids within The Active Site of a Penicillin Binding Protein
  89. 2y55: Unexpected Tricovalent Binding Mode of Boronic Acids within The Active Site of a Penicillin Binding Protein
  90. 2y59: Unexpected Tricovalent Binding Mode of Boronic Acids within The Active Site of a Penicillin Binding Protein
  91. 6vje: Penicillin-binding Protein in Complex with Antibiotic
  92. 6un3: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Ticarcillin
  93. 6un1: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Temocillin
  94. 3v39: Bd3459, a Predatory Peptidoglycan Endopeptidase from Bdellovibrio Bacteriovorus
  95. 3zvt: Unexpected Tricovalent Binding Mode of Boronic Acids within The Active Site of a Penicillin Binding Protein
  96. 3zvw: Unexpected Tricovalent Binding Mode of Boronic Acids within The Active Site of a Penicillin Binding Protein
  97. 6p56: Crystal Structure of The Transpeptidase Domain of a T498A Mutant of Pbp2 from Neisseria Gonorrhoeae
  98. 6p55: Crystal Structure of Transpeptidase Domain of Pbp2 from Neisseria Gonorrhoeae Acylated by Cefixime
  99. 6p54: Crystal Structure of Transpeptidase Domain of Pbp2 from Neisseria Gonorrhoeae Acylated by Ceftriaxone
  100. 6p53: Crystal Structure of The Transpeptidase Domain of Pbp2 from Neisseria Gonorrhoeae in Apo Form
  101. 6p52: Crystal Structure of Transpeptidase Domain of Pbp2 from Neisseria Gonorrhoeae with a Bound Phosphate at The Active Site
  102. 6osu: Crystal Structure of The D-alanyl-d-alanine Carboxypeptidase Dacd from Francisella Tularensis
  103. 6ntz: Crystal Structure of E. Coli Pbp5-meropenem
  104. 4dki: Structural Insights into The Anti- Methicillin-resistant Staphylococcus Aureus (mrsa) Activity of Ceftobiprole
  105. 3upn: Structure of Penicillin-binding Protein a from M. Tuberculosis: Imipenem Acyl-enzyme Complex
  106. 3upo: Structure of Penicillin-binding Protein a from M. Tuberculosis: Penicillin G Acyl-enzyme Complex
  107. 3upp: Structure of Penicillin-binding Protein a from M. Tuberculosis: Ceftrixaone Acyl-enzyme Complex
  108. 6i1i: Crystal Structure of Tp Domain from Escherichia Coli Penicillin- Binding Protein 3 in Complex with Penicillin
  109. 6i1e: Crystal Structure of Pseudomonas Aeruginosa Penicillin-binding Protein 3 in Complex with Amoxicillin
  110. 6hzr: Apo Structure of Pseudomonas Aeruginosa Penicillin-binding Protein 3
  111. 6hzq: Apo Structure of Tp Domain from Escherichia Coli Penicillin-binding Protein 3
  112. 6hzj: Apo Structure of Tp Domain from Clinical Penicillin-resistant Mutant Neisseria Gonorrhoea Strain 6140 Penicillin-binding Protein 2 (pbp2)
  113. 6hzi: Apo Structure of Tp Domain from Burkholderia Pseudomallei Penicillin- Binding Protein 3
  114. 6hr9: Nitrocefin Acylation of Both Catalytic Serines of The Y409 Mutant of Penicillin-binding Protein 3 from P. Aeruginosa
  115. 6hr6: Nitrocefin Acylation of Single Catalytic Serine of Penicillin-binding Protein 3 from P. Aeruginosa
  116. 6hr4: Apo Form of Penicillin-binding Protein 3 from P. Aeruginosa
  117. 3zcz: Crystal Structure of a Complex between Actinomadura R39 Dd- Peptidase and a Trifluoroketone Inhibitor
  118. 6h5o: Crystal Structure of PBP2A from Mrsa in Complex with Piperacillin at Active Site.
  119. 4ben: R39-imipenem Acyl-enzyme Crystal Structure
  120. 4jid: 2.3 Angstrom Resolution Crystal Structure of D-alanyl-d-alanine Carboxypeptidase from Bacillus Anthracis.
  121. 6g9s: Structural Basis for The Inhibition of E. Coli Pbp2
  122. 6g9p: Structural Basis for The Inhibition of E. Coli Pbp2
  123. 6g9f: Structural Basis for The Inhibition of E. Coli Pbp2
  124. 6g5r: Structure of The UB2H Domain of E.coli PBP1B in Complex with Lpob
  125. 6fzk: Nmr Structure of UB2H, Regulatory Domain of PBP1B from E. Coli
  126. 3zfz: Crystal Structure of Ceftaroline ACYL-PBP2A from Mrsa with Non-covalently Bound Ceftaroline and Muramic Acid at Allosteric Site Obtained by Soaking
  127. 3zg0: Crystal Structure of Ceftaroline ACYL-PBP2A from Mrsa with Non-covalently Bound Ceftaroline and Muramic Acid at Allosteric Site Obtained by Cocrystallization
  128. 3zg5: Crystal Structure of PBP2A from Mrsa in Complex with Peptidoglycan Analogue at Allosteric
  129. 4b4x: Crystal Structure of a Complex between Actinomadura R39 Dd- Peptidase and a Sulfonamide Boronate Inhibitor
  130. 4b4z: Crystal Structure of a Complex between Actinomadura R39 Dd-peptidase and a Sulfonamide Boronate Inhibitor
  131. 4bl2: Crystal Structure of PBP2A Clinical Mutant E150K from Mrsa
  132. 4bl3: Crystal Structure of PBP2A Clinical Mutant N146K from Mrsa
  133. 4cpk: Crystal Structure of PBP2A Double Clinical Mutant N146K- E150K from Mrsa
  134. 4k91: Crystal Structure of Penicillin-binding Protein 5 (pbp5) from Pseudomonas Aeruginosa in Apo State
  135. 4p0m: Crystal Structure of an Evolved Putative Penicillin-binding Protein Homolog, Rv2911, from Mycobacterium Tuberculosis
  136. 4u3t: Crystal Structure of The Transpeptidase Domain of Neisseria Gonorrhoeae Penicillin-binding Protein 2 Derived from The Penicillin- Resistant Strain 6140
  137. 5tr7: Crystal Structure of a Putative D-alanyl-d-alanine Carboxypeptidase from Vibrio Cholerae O1 Biovar Eltor Str. N16961
  138. 5ksh: Crystal Structure of Penicillin-binding Protein 2 from Neisseria Gonorrhoeae Containing an A501T Mutation Associated with Cephalosporin Resistance
  139. 5j8x: Crystal Structure of E. Coli Pbp5 with 2c
  140. 5hnm: Crystal Structure of Vancomycin Resistance D,d-pentapeptidase Vany E175A Mutant from Vanb-type Resistance Cassette in Complex with Zn(ii)
  141. 5fsr: Crystal Structure of Penicillin Binding Protein 6b from Escherichia Coli
  142. 5cer: Bd0816 Predatory Endopeptidase from Bdellovibrio Bacteriovorus in Complex with Immunity Protein Bd3460
  143. 5ced: Penicillin G Acylated Bd3459 Predatory Endopeptidase from Bdellovibrio Bacteriovorus in Complex with Immunity Protein Bd3460
  144. 5cec: Bd3459 Predatory Endopeptidase from Bdellovibrio Bacteriovorus in Complex with Immunity Protein Bd3460
  145. 5ceb: Bd3459 Predatory Endopeptidase from Bdellovibrio Bacteriovorus, K38M Form
  146. 4cjn: Crystal Structure of PBP2A from Mrsa in Complex with Quinazolinone Ligand
  147. 7kis: Crystal Structure of Pseudomonas Aeruginosa Pbp2 in Complex with Wck 5153
  148. 7kit: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Wck 4234
  149. 7kiv: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Avibactam
  150. 7kiw: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Zidebactam
  151. 7lc4: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Gamma-lactam Yu253911
  152. 7jwl: Crystal Structure of Pseudomonas Aeruginosa Penicillin Binding Protein 3 (pae-pbp3) Bound to Etx0462
  153. 7lq6: Cryoem Structure of Escherichia Coli PBP1B
  154. 6xqv: Crystal Structure of The Catalytic Domain of Pbp2 S310A from Neisseria Gonorrhoeae in a Pre-acylation Complex with Ceftriaxone
  155. 6xqx: Crystal Structure of The Catalytic Domain of Pbp2 S310A from Neisseria Gonorrhoeae with The H514A Mutation at Ph 7.5
  156. 6xqy: Crystal Structure of The Catalytic Domain of Pbp2 S310A from Neisseria Gonorrhoeae at Ph 9.5
  157. 6xqz: Crystal Structure of The Catalytic Domain of Pbp2 S310A from Neisseria Gonorrhoeae at Ph 7.5
  158. 7onk: Crystal Structure of Pbp3 from P. Aeruginosa in Complex with Aic499
  159. 7onn: Crystal Structure of Pbp3 Transpeptidase Domain from E. Coli in Complex with Aic499
  160. 7ono: Crystal Structure of Pbp3 Transpeptidase Domain from E. Coli
  161. 7onw: Crystal Structure of Pbp3 from E. Coli in Complex with Aic499
  162. 7onx: Crystal Structure of Pbp3 from P. Aeruginosa
  163. 7ony: Crystal Structure of Pbp3 from P. Aeruginosa
  164. 7onz: Crystal Structure of Pbp3 from P. Aeruginosa
  165. 7atm: Structure of P. Aeruginosa Pbp3 in Complex with a Phenyl Boronic Acid (compound 1)
  166. 7ato: Structure of P. Aeruginosa Pbp3 in Complex with an Aryl Boronic Acid (compound 2)
  167. 7atw: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 3)
  168. 7atx: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 4)
  169. 7au0: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 7)
  170. 7au1: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 12)
  171. 7au8: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 13)
  172. 7au9: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 14)
  173. 7aub: Structure of P. Aeruginosa Pbp3 in Complex with a Benzoxaborole (compound 15)
  174. 7auh: Structure of P. Aeruginosa Pbp3 in Complex with Vaborbactam
  175. 7ly1: Crystal Structure of Pseudomonas Aeruginosa Pbp3 in Complex with Vaborbactam
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