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enzyme (lysozyme)

 
Enzymes
  Enzyme classes:
  EC 1: Oxidoreductases
  EC 2: Transferases
  EC 3: Hydrolases
  EC 4: Lyases
  EC 5: Isomerases
  EC 6: Ligases
    EC 6.1
    EC 6.2
    EC 6.3
    EC 6.4
    EC 6.5
      EC 6.5.1
        EC 6.5.1.1
        EC 6.5.1.2
        EC 6.5.1.3
        EC 6.5.1.4
    EC 6.6
  General information:
  Catalytic mechanism
  Enzyme kinetics
  Inhibitors
  Enzymes in industry

EC 6.5.1.1 - poly(deoxyribonucleotide) :poly(deoxyribonucleotide) ligase (AMP- forming)



3D structures of EC 6.5.1.1 in Protein Data Bank

updated: 27 November 2021, 5:15

In total: 56 PDB structures of EC 6.5.1.1:
  1. 1a0i: Atp-dependent Dna Ligase from Bacteriophage T7 Complex with Atp
  2. 1ik9: Crystal Structure of a Xrcc4-dna Ligase IV Complex
  3. 1imo: Nmr Structure of Human Dna Ligase Iiialpha Brct Domain
  4. 1in1: Nmr Structure of Human Dna Ligase Iiialpha Brct Domain
  5. 3l2p: Human Dna Ligase III Recognizes Dna Ends by Dynamic Switching between Two Dna Bound States
  6. 3ii6: Structure of Human Xrcc4 in Complex with The Tandem Brct Domains of Dna Ligaseiv.
  7. 3gde: The Closed Conformation of Atp-dependent Dna Ligase from Archaeoglobus Fulgidus
  8. 1uw0: Solution Structure of The Zinc-finger Domain from Dna Ligase Iiia
  9. 1x9n: Crystal Structure of Human Dna Ligase I Bound to 5'- Adenylated, Nicked Dna
  10. 1z56: Co-crystal Structure of LIF1P-LIG4P
  11. 2cfm: Atp-dependent Dna Ligase from Pyrococcus Furiosus
  12. 2od8: Structure of a Peptide Derived from Cdc9 Bound to Pcna
  13. 6bkg: Human Ligiv Catalytic Domain with Bound Dna-adenylate Intermediate in Closed Conformation
  14. 6bkf: Lysyl-adenylate Form of Human Ligiv Catalytic Domain with Bound Dna Substrate in Open Conformation
  15. 2e2w: Solution Structure of The First Brct Domain of Human Dna Ligase IV
  16. 2hiv: Atp-dependent Dna Ligase from S. Solfataricus
  17. 2hix: Atp Dependent Dna Ligase from S. Solfataricus Bound to Atp
  18. 6wh1: Structure of The Complex of Human Dna Ligase Iii-alpha and Xrcc1 Brct Domains
  19. 3pc7: X-ray Crystal Structure of The Dna Ligase Iii-alpha Brct Domain.
  20. 3pc8: X-ray Crystal Structure of The Heterodimeric Complex of Xrcc1 and Dna Ligase Iii-alpha Brct Domains.
  21. 3qvg: Xrcc1 Bound to Dna Ligase
  22. 6q1v: Human Dna Ligase 1 (E592R) Bound to an Adenylated, Hydroxyl Terminated Dna Nick
  23. 6p0e: Human Dna Ligase 1 (E346A,E592A) Bound to Adenylated Dna Containing an 8-oxo Guanine:adenine Base-pair
  24. 6p0d: Human Dna Ligase 1 (E346A/E592A) Bound to an Adenylated, Hydroxyl Terminated Dna Nick
  25. 6p0c: Human Dna Ligase 1 Bound to an Adenylated, Hydroxyl Terminated Dna Nick in Edta
  26. 6p0b: Human Dna Ligase 1 (E346A/E592A) Bound to an Adenylated, Dideoxy Terminated Dna Nick with 200 Mm Mg2+
  27. 6p0a: Human Dna Ligase 1 Bound to an Adenylated, Dideoxy Terminated Dna Nick with 2 Mm Mg2+
  28. 6p09: Human Dna Ligase 1 Bound to an Adenylated, Dideoxy Terminated Dna Nick with 200 Mm Mg2+
  29. 3rr5: Dna Ligase from The Archaeon Thermococcus Sp. 1519
  30. 4eq5: Dna Ligase from The Archaeon Thermococcus Sibiricus
  31. 6nhz: Mycobacterial Dna Ligase D Complexed with Atp and Mg
  32. 6nhx: Mycobacterial Dna Ligase D Complexed with Atp and Mes
  33. 3vnn: Crystal Structure of a Sub-domain of The Nucleotidyltransferase (adenylation) Domain of Human Dna Ligase IV
  34. 4hto: Crystal Structure of The Dbd Domain of Human Dna Ligase IV Apo Form
  35. 4htp: Crystal Structure of The Dbd Domain of Human Dna Ligase IV Bound to Artemis Peptide
  36. 3w1b: Crystal Structure of Human Dna Ligase Iv-artemis Complex (mercury Derivative)
  37. 3w1g: Crystal Structure of Human Dna Ligase Iv-artemis Complex (native)
  38. 3w5o: Crystal Structure of Human Dna Ligase IV
  39. 6dt1: Crystal Structure of The Ligase from Bacteriophage T4 Complexed with Dna Intermediate
  40. 5wfy: Crystal Structure of Dna-binding Domain of The Bacteriophage T4 Ligase
  41. 5fpr: Structure of Bacterial Dna Ligase with Small-molecule Ligand Pyrimidin-2-amine (at371) in an Alternate Binding Site.
  42. 5fpo: Structure of Bacterial Dna Ligase with Small-molecule Ligand 1h-indazol-7-amine (at4213) in an Alternate Binding Site.
  43. 4rj9: Structure of a Plant Specific C2 Domain Protein, Osgap1 from Rice
  44. 7l34: Human Dna Ligase 1 - R641L Nicked Dna Complex
  45. 7l35: Human Dna Ligase 1 - R771W Nicked Dna Complex
  46. 7kr3: Human Dna Ligase 1(E346A/E592A) Bound to a Bulged Dna Substrate
  47. 7kr4: Human Dna Ligase 1(E346A/E592A) Bound to a Nicked Dna Substrate Control Duplex
  48. 7d9k: Dna Binding Domain of Human Dna Ligase IV - Wild Type
  49. 7d9y: Dna Binding Domain of Human Dna Ligase IV Mutant - A3V
  50. 7lsy: Nhej Short-range Synaptic Complex
  51. 7lt3: Nhej Long-range Synaptic Complex
  52. 7nfc: Cryo-em Structure of Nhej Super-complex (dimer)
  53. 7nfe: Cryo-em Structure of Nhej Super-complex (monomer)
  54. 7rpo: Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with Non- Ligatable Dna
  55. 7rpw: Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with Adenylated Dna
  56. 7rpx: Archaeal Dna Ligase and Heterotrimeric Pcna in Complex with End-joined Dna
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