EC 2.7.4.6 - ATP:nucleoside- diphosphate phosphotransferase (nucleoside- diphosphate kinase)

3D structures of EC 2.7.4.6 - nucleoside-diphosphate kinase in Protein Data Bank

updated: 6 January 2022, 2:15

1. 1b4s: Structure of Nucleoside Diphosphate Kinase H122G Mutant
2. 1b99: 3'-fluoro-uridine Diphosphate Binding to Nucleoside Diphosphate Kinase
3. 1be4: Nucleoside Diphosphate Kinase Isoform B from Bovine Retina
4. 1bhn: Nucleoside Diphosphate Kinase Isoform a from Bovine Retina
5. 1bux: 3'-phosphorylated Nucleotides Binding to Nucleoside Diphosphate Kinase
6. 1ehw: Human Nucleoside Diphosphate Kinase 4
7. 1f3f: Structure of The H122G Nucleoside Diphosphate Kinase / D4T- Triphosphate.mg Complex
8. 1f6t: Structure of The Nucleoside Diphosphate Kinase/alpha- Borano(rp)-tdp.mg Complex
9. 1hhq: Role of Active Site Resiude Lys16 in Nucleoside Diphosphate Kinase
10. 1hiy: Binding of Nucleotides to Ndp Kinase
11. 1hlw: Structure of The H122A Mutant of The Nucleoside Diphosphate Kinase
12. 1jxv: Crystal Structure of Human Nucleoside Diphosphate Kinase a
13. 1k44: Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
14. 1kdn: Structure of Nucleoside Diphosphate Kinase
15. 3pj9: Crystal Structure of a Nucleoside Diphosphate Kinase from Campylobacter Jejuni
16. 1leo: P100S Nucleoside Diphosphate Kinase
17. 1lwx: Azt Diphosphate Binding to Nucleoside Diphosphate Kinase
18. 1mn7: Ndp Kinase Mutant (H122G;N119S;F64W) in Complex with Abazttp
19. 1mn9: Ndp Kinase Mutant (H122G) Complex with Rtp
20. 3mpd: Crystal Structure of Nucleoside Diphosphate Kinase from Encephalitozoon Cuniculi, Cubic Form, Apo
21. 1nb2: Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans
22. 1ncl: Thermal Stability of Hexameric and Tetrameric Nucleoside, Diphosphate Kinases
23. 1ndc: X-ray Structure of Nucleoside Diphosphate Kinase Complexed with Dtdp and Mg2+ at 2 a Resolution
24. 1ndk: X-ray Structure of Nucleoside Diphosphate Kinase
25. 1ndl: The Awd Nucleotide Diphosphate Kinase from Drosophila
26. 1ndp: Adenosine 5'-diphosphate Binding and The Active Site of Nucleoside Diphosphate Kinase
27. 1nhk: Crystal Structure of Myxococcus Xanthus Nucleoside Diphosphate Kinase and Its Interaction with a Nucleotide Substrate at 2.0 Angstroms Resolution
28. 1nlk: Crystal Structure of Myxococcus Xanthus Nucleoside Diphosphate Kinase and Its Interaction with a Nucleotide Substrate at 2.0 Angstroms Resolution
29. 3l7u: Crystal Structure of Human Nm23-h1
30. 1npk: Refined X-ray Structure of Dictyostelium Nucleoside Diphosphate Kinase at 1,8 Angstroms Resolution
31. 1nsk: The Crystal Structure of a Human Nucleoside Diphosphate Kinase, Nm23-h2
32. 1nsp: Mechanism of Phosphate Transfer by Nucleoside Diphosphate Kinase: X-ray Structures of a Phospho-histidine Intermediate of The Enzymes from Drosophila and Dictyostelium
33. 1nsq: Mechanism of Phosphate Transfer by Nucleoside Diphosphate Kinase: X-ray Structures of a Phospho-histidine Intermediate of The Enzymes from Drosophila and Dictyostelium
34. 1nue: X-ray Structure of Nm23 Human Nucleoside Diphosphate Kinase B Complexed with Gdp at 2 Angstroms Resolution
35. 1pae: Nucleoside Diphosphate Kinase
36. 1pku: Crystal Structure of Nucleoside Diphosphate Kinase from Rice
37. 3gpa: Crystal Structure of The Mimivirus Ndk N62L Mutant Complexed with Cdp
38. 3gp9: Crystal Structure of The Mimivirus Ndk Complexed with Gdp
39. 3g2x: Structure of Mimivirus Ndk +kpn - N62L Double Mutant Complexed with Dtdp
40. 1s57: Crystal Structure of Nucleoside Diphosphate Kinase 2 from Arabidopsis
41. 1s59: Structure of Nucleoside Diphosphate Kinase 2 with Bound Dgtp from Arabidopsis
42. 1s5z: Ndp Kinase in Complex with Adenosine Phosphonoacetic Acid
43. 3fkb: Structure of Ndpk H122G and Tenofovir-diphosphate
44. 3fcw: Crystal Structure of The Mimivirus Ndk N62L Mutant Complexed with Udp
45. 3fcv: Crystal Structure of The Mimivirus Ndk +KPN-N62L-R107G Triple Mutant Complexed with Dudp
46. 3fc9: Crystal Structure of The Mimivirus Ndk +KPN-N62L Double Mutant Complexed with Cdp
47. 3fbf: Crystal Structure of The Mimivirus Ndk N62L Mutant Complexed with Dtdp
48. 3fbe: Crystal Structure of The Mimivirus Ndk N62L-R107G Double Mutant Complexed with Gdp
49. 3fbc: Crystal Structure of The Mimivirus Ndk N62L-R107G Double Mutant Complexed with Dtdp
50. 3fbb: Crystal Structure of The Mimivirus Ndk N62L-R107G Double Mutant Complexed with Udp
51. 3evw: Crystal Structure of The Mimivirus Ndk R107G Mutant Complexed with Dtdp
52. 3evo: Crystal Structure of The Mimivirus Ndk +kpn Mutant Complexed with Dtdp
53. 3evm: Crystal Structure of The Mimivirus Ndk +KPN-N62L-R107G Triple Mutant Complexed with Dcdp
54. 3etm: Crystal Structure of The Mimivirus Ndk +KPN-N62L-R107G Triple Mutant Complexed with Cdp
55. 3ena: Crystal Structure of The Mimivirus Ndk +KPN-N62L-R107G Triple Mutant Complexed with Dgdp
56. 3emt: Crystal Structure of The Mimivirus Ndk +KPN-R107G Double Mutant Complexed with Dgdp
57. 3em1: Crystal Structure of The Mimivirus Ndk +KPN-N62L Double Mutant Complexed with Dtdp
58. 3elh: X-ray Structure of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed with Dudp
59. 3ejm: Crystal Structure of The Mimivirus Ndk +kpn Mutant Complexed with Gdp
60. 3eic: X-ray Structure of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed with Udp
61. 3ee3: Crystal Structure of Acanthamoeba Polyphaga Mimivirus Nucleoside Diphosphate Kinase Complexed with Cdp
62. 3dkd: Crystal Structure of The Mimivirus Ndk +KPN-N62L-R107G Triple Mutant Complexed with Gdp
63. 1u8w: Crystal Structure of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1
64. 1ucn: X-ray Structure of Human Nucleoside Diphosphate Kinase a Complexed with Adp at 2 a Resolution
65. 3ddi: Crystal Structure of The Mimivirus Ndk +KPN-N62L-R107G Triple Mutant Complexed with Tdp
66. 1w7w: Structure and Mutational Analysis of a Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification of Residues Involved in Serine Phosphorylation and Oligomerization.
67. 3bbf: Crystal Structure of The Nm23-h2 Transcription Factor Complex with Gdp
68. 3bbc: Crystal Structure of R88A Mutant of The Nm23-h2 Transcription Factor
69. 3bbb: Crystal Structure of The Nm23-h2 Transcription Factor Complex with Dinucleotide D(ag)
70. 3b6b: Crystal Structure of Acanthamoeba Polyphaga Mimivirus Nucleoside Diphosphate Kinase Complexed with Dgdp
71. 3b54: Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
72. 1wkj: Crystal Structure of Nucleoside Diphosphate Kinase from Thermus Thermophilus Hb8
73. 1wkk: Crystal Structure of Nucleoside Diphosphate Kinase from Thermus Thermophilus Hb8 in Complex with Gdp
74. 1wkl: Crystal Structure of Nucleoside Diphosphate Kinase from Thermus Thermophilus Hb8 in Complex with Atp and Adp
75. 1xiq: Plasmodium Falciparum Nucleoside Diphosphate Kinase B
76. 1xqi: Crystal Structure Analysis of an Ndp Kinase from Pyrobaculum Aerophilum
77. 1zs6: Structure of Human Nucleoside-diphosphate Kinase 3
78. 2vu5: Crystal Structure of Pndk from Bacillus Anthracis
79. 7jtk: Radial Spoke 1 Isolated from Chlamydomonas Reinhardtii
80. 7jrj: Chlamydomonas Reinhardtii Radial Spoke Head and Neck (recombinant)
81. 2az1: Structure of a Halophilic Nucleoside Diphosphate Kinase from Halobacterium Salinarum
82. 2az3: Structure of a Halophilic Nucleoside Diphosphate Kinase from Halobacterium Salinarum in Complex with Cdp
83. 2b8p: Crystal Structure of Acanthamoeba Polyphaga Mimivirus Ndk, The First Viral Nucleoside Diphosphate Kinase
84. 2b8q: X-ray Structure of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed with Tdp
85. 2bef: Crystal Structure of Ndp Kinase Complexed with Mg, Adp, and Bef3
86. 2cwk: Crystal Structure of Nucleotide Diphosphate Kinase from Pyrococcus Horikoshii
87. 6xpw: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293 Bound to Cdp
88. 6xpv: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293 Bound to Dtdp
89. 6xpu: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293 Bound to Idp
90. 6xpt: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293 Bound to Udp
91. 6xps: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293 Bound to Gdp
92. 6xp7: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293 Bound to Adp
93. 6xp4: Nucleoside Diphosphate Kinase from Aspergillus Fumgiatus Af293
94. 2dxd: Crystal Structure of Nucleoside Diphosphate Kinase in Complex with Atp Analog
95. 2dxe: Crystal Structure of Nucleoside Diphosphate Kinase in Complex with Gdp
96. 2dxf: Crystal Structure of Nucleoside Diphosphate Kinase in Complex with Gtp Analog
97. 2dy9: Crystal Structure of Nucleoside Diphosphate Kinase in Complex with Adp
98. 2dya: Crystal Structure of Complex between Adenine Nucleotide and Nucleoside Diphosphate Kinase
99. 6ay1: Crystal Structure of a Nucleoside Diphosphate Kinase Ndk from Helicobacter Pylori
100. 6agy: Aspergillus Fumigatus Af293 Ndk
101. 6aes: Crystal Structure of Nucleoside Diphosphate Kinase from Pseudomonas Aeruginosa at 3.55 a Resolution.
102. 2nck: Crystal Structure of Myxococcus Xanthus Nucleoside Diphosphate Kinase and Its Interaction with a Nucleotide Substrate at 2.0 Angstroms Resolution
103. 5yol: Crystal Structure of Octameric Form of Nucleoside Diphosphate Kinase from Acinetobacter Baumannii at 2.2 a Resolution
104. 2hur: Escherichia Coli Nucleoside Diphosphate Kinase
105. 2hvd: Human Nucleoside Diphosphate Kinase a Complexed with Adp
106. 2hve: S120G Mutant of Human Nucleoside Diphosphate Kinase a Complexed with Adp
107. 3ngr: Crystal Structure of Leishmania Nucleoside Diphosphate Kinase B with Unordered Nucleotide-binding Loop.
108. 3ngs: Structure of Leishmania Nucleoside Diphosphate Kinase B with Ordered Nucleotide-binding Loop
109. 3ngt: Structure of Leishmania Ndkb Complexed with Amp.
110. 3ngu: Structure of Leishmania Ndkb Complexed with Adp.
111. 3r9l: Crystal Structure of Nucleoside Diphosphate Kinase from Giardia Lamblia Featuring a Disordered Dinucleotide Binding Site
112. 3prv: Nucleoside Diphosphate Kinase B from Trypanosoma Cruzi
113. 3q83: Crystal Structure of Staphylococcus Aureus Nucleoside Diphosphate Kinase
114. 3q86: Crystal Structure of Staphylococcus Aureus Nucleoside Diphosphate Kinase Complexed with Gtp
115. 3q89: Crystal Structure of Staphylococcus Aureus Nucleoside Diphosphate Kinase Complexed with Cdp
116. 3q8u: Crystal Structure of Staphylococcus Aureus Nucleoside Diphosphate Kinase Complexed with Adp
117. 3q8v: Crystal Structure of Staphylococcus Aureus Nucleoside Diphosphate Kinase Complexed with Udp
118. 3q8y: Crystal Structure of Staphylococcus Aureus Nucleoside Diphosphate Kinase Complexed with Adp and Vanadate
119. 6qa2: R80A Mutant of Nucleoside Diphosphate Kinase from Mycobacterium Tuberculosis
120. 4di6: Crystal Structure of Nucleoside-diphosphate Kinase from Borrelia Burgdorferi
121. 3ztq: Hexagonal Crystal Form P61 of The Aquifex Aeolicus Nucleoside Diphosphate Kinase
122. 3zto: Orthorhombic Crystal Form C222 of The Aquifex Aeolicus Nucleoside Diphosphate Kinase
123. 3ztp: Orthorhombic Crystal Form P21212 of The Aquifex Aeolicus Nucleoside Diphosphate Kinase
124. 3ztr: Hexagonal Form P6122 of The Aquifex Aeolicus Nucleoside Diphosphate Kinase (first Stage of Radiation Damage)
125. 3zts: Hexagonal Form P6122 of The Aquifex Aeolicus Nucleoside Diphosphate Kinase (final Stage of Radiation Damage)
126. 4dut: The Structure of Nucleoside Diphosphate Kinase (ndk) from Burkholderia Thailandensis
127. 4dz6: Transition State Mimic of Nucleoside-diphosphate Kinase from Borrelia Burgdorferi with Bound Vanadate and Adp
128. 4ek2: The Structure of Nucleoside Diphosphate Kinase (ndk) from Burkholderia Thailandensis Bound to Deoxyadenosine Monophosphate
129. 4f36: Crystal Structure of Nucleoside Diphosphate Kinase B from Trypanosoma Brucei, Apo Form
130. 4f4a: Crystal Structure of Nucleoside Diphosphate Kinase B from Trypanosoma Brucei, Udp-bound Form
131. 4fkx: Crystal Structure of Nucleoside Diphosphate Kinase B from Trypanosoma Brucei Bound to Cdp
132. 4fky: Crystal Structure of Nucleoside Diphosphate Kinase B from Trypanosoma Brucei Bound to Gtp
133. 3vgs: Wild-type Nucleoside Diphosphate Kinase Derived from Halomonas Sp. 593
134. 3vgt: Wild-type Nucleoside Diphosphate Kinase Derived from Halomonas Sp. 593
135. 3vgu: E134A Mutant Nucleoside Diphosphate Kinase Derived from Halomonas Sp. 593
136. 3vgv: E134A Mutant Nucleoside Diphosphate Kinase Derived from Halomonas Sp. 593
137. 6k3h: Crystallographic Analysis of Nucleoside Diphosphate Kinase (ndk) from Aspergillus Flavus
138. 4hr2: Structure of Nucleoside Diphosphate Kinase (ndk) from Burkholderia Thailandensis Bound to Adp
139. 4anc: Crystal Form I of The D93N Mutant of Nucleoside Diphosphate Kinase from Mycobacterium Tuberculosis
140. 4and: Crystal Form II of The D93N Mutant of Nucleoside Diphosphate Kinase from Mycobacterium Tuberculosis
141. 4ane: R80N Mutant of Nucleoside Diphosphate Kinase from Mycobacterium Tuberculosis
142. 4eno: Crystal Structure of Oxidized Human Nm23-h1
143. 3vvt: Crystal Structure of Reconstructed Archaeal Ancestral Ndk, Arc1
144. 3vvu: Crystal Structure of Reconstructed Bacterial Ancestral Ndk, Bac1
145. 6joh: The Crystal of Nucleoside Diphosphate Kinase from Aspergillus Flavus
146. 4c6a: High Resolution Structure of The Nucleoside Diphosphate Kinase
147. 4kpc: Crystal Structure of The Nucleoside Diphosphate Kinase B from Leishmania Braziliensis
148. 4o0n: 2.4 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma Gondii.
149. 5yih: Crystal Structure of Tetrameric Nucleoside Diphosphate Kinase at 1.98 a Resolution from Acinetobacter Baumannii
150. 5ycf: Crystal Structure of Xiphophorus Maculatus Adenylate Kinase
151. 5xz2: Crystal Structure of Adenylate Kinase
152. 5x00: Nucleoside Diphosphate Kinase from Vibrio Cholerae Is a Thermolabile Type II Tetramer
153. 4uof: Crystallographic Structure of Nucleoside Diphosphate Kinase from Litopenaeus Vannamei Complexed with Dadp
154. 4uog: Crystallographic Structure of Nucleoside Diphosphate Kinase from Litopenaeus Vannamei Complexed with Dcdp
155. 4uoh: Crystallographic Structure of Nucleoside Diphosphate Kinase from Litopenaeus Vannamei Complexed with Adp
156. 5v6d: Crystal Structure of Nucleoside Diphosphate Kinase from Neisseria Gonorrhoeae in Complex with Citrate
157. 5ui4: Structure of Nme1 Covalently Conjugated to Imidazole Fluorosulfate
158. 5kk8: Crystal Structure of Nucleoside Diphosphate Kinase from Schistosoma Mansoni in Complex with Adp
159. 5iom: Crystal Structure of Nucleoside Diphosphate Kinase from Schistosoma Mansoni Is Space Group P6322
160. 5iol: Crystal Structure of Nucleoside Diphosphate Kinase from Schistosoma Mansoni
161. 5go1: Structural, Functional Characterization and Discovery of Novel Inhibitors of Leishmania Amazonensis Nucleoside Diphosphatase Kinase (ndk)
162. 5cab: Structure of Leishmania Nucleoside Diphostate Kinase Mutant Del5-cterm
163. 5caa: Structure of Leishmania Nucleoside Diphosphate Kinase Mutant P100S/DEL5-CTERM
164. 5c7p: Structure of Leishmania Nucleoside Diphostate Kinase Mutant P95S
165. 5bxi: 1.7 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma Gondii with Tyrosine of Tag Bound to Active Site
166. 4cp5: Ndpk in Complex with (rp)-spmpapp
167. 4s0m: Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 a Resolution from Acinetobacter Baumannii
168. 1vya: Identification and Characterization of The First Plant G-quadruplex Binding Protein Encoded by The Zea Mays L. Nucleoside Diphosphate1 Gene, Zmndpk1
169. 3wx8: Purification, Characterization and Structure of Nucleoside Diphosphate Kinase from Drosophila S2 Cells
170. 4w98: Acinetobacter Baumannii Sdf Ndk
171. 4wbf: Acinetobacter Baumannii Sdf Ndk
172. 7e9v: The Crystal Structure of Human Ump-cmp Kinase from Biortus.
173. 7de3: Human Adenylate Kinase 1 (hak1) MUTANT-R128W