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enzyme (lysozyme)

 
Enzymes
  Enzyme classes:
  EC 1: Oxidoreductases
  EC 2: Transferases
  EC 3: Hydrolases
    EC 3.1
    EC 3.2
    EC 3.3
    EC 3.4
    EC 3.5
      EC 3.5.1
        EC 3.5.1.1
        EC 3.5.1.2
        EC 3.5.1.3
        EC 3.5.1.4
        EC 3.5.1.5
        EC 3.5.1.6
        EC 3.5.1.7
        EC 3.5.1.8
        EC 3.5.1.9
        EC 3.5.1.10
        EC 3.5.1.11
        EC 3.5.1.12
        EC 3.5.1.13
        EC 3.5.1.14
        EC 3.5.1.15
        EC 3.5.1.16
        EC 3.5.1.17
        EC 3.5.1.18
        EC 3.5.1.19
        EC 3.5.1.20
        EC 3.5.1.21
        EC 3.5.1.22
        EC 3.5.1.23
        EC 3.5.1.24
        EC 3.5.1.25
        EC 3.5.1.26
        EC 3.5.1.27
        EC 3.5.1.28
        EC 3.5.1.29
        EC 3.5.1.30
        EC 3.5.1.31
        EC 3.5.1.32
        EC 3.5.1.33
        EC 3.5.1.34
        EC 3.5.1.35
        EC 3.5.1.36
        EC 3.5.1.37
        EC 3.5.1.39
        EC 3.5.1.40
        EC 3.5.1.41
        EC 3.5.1.42
        EC 3.5.1.43
        EC 3.5.1.44
        EC 3.5.1.45
        EC 3.5.1.46
        EC 3.5.1.47
        EC 3.5.1.48
        EC 3.5.1.49
        EC 3.5.1.50
        EC 3.5.1.51
        EC 3.5.1.52
        EC 3.5.1.53
        EC 3.5.1.54
        EC 3.5.1.55
        EC 3.5.1.56
        EC 3.5.1.57
        EC 3.5.1.58
        EC 3.5.1.59
        EC 3.5.1.60
        EC 3.5.1.61
        EC 3.5.1.62
        EC 3.5.1.63
        EC 3.5.1.64
        EC 3.5.1.65
        EC 3.5.1.66
        EC 3.5.1.67
        EC 3.5.1.68
        EC 3.5.1.69
        EC 3.5.1.70
        EC 3.5.1.71
        EC 3.5.1.72
        EC 3.5.1.73
        EC 3.5.1.74
        EC 3.5.1.75
        EC 3.5.1.76
        EC 3.5.1.77
        EC 3.5.1.78
        EC 3.5.1.79
        EC 3.5.1.80
        EC 3.5.1.81
        EC 3.5.1.82
        EC 3.5.1.83
        EC 3.5.1.84
        EC 3.5.1.85
        EC 3.5.1.86
        EC 3.5.1.87
        EC 3.5.1.88
        EC 3.5.1.89
        EC 3.5.1.90
        EC 3.5.1.91
        EC 3.5.1.92
        EC 3.5.1.93
        EC 3.5.1.94
        EC 3.5.1.95
        EC 3.5.1.96
        EC 3.5.1.97
        EC 3.5.1.98
      EC 3.5.2
      EC 3.5.3
      EC 3.5.4
      EC 3.5.5
      EC 3.5.99
    EC 3.6
    EC 3.7
    EC 3.8
    EC 3.9
    EC 3.10
    EC 3.11
    EC 3.12
    EC 3.13
  EC 4: Lyases
  EC 5: Isomerases
  EC 6: Ligases
  General information:
  Catalytic mechanism
  Enzyme kinetics
  Inhibitors
  Enzymes in industry

EC 3.5.1.88 - formyl- L- methionyl peptide amidohydrolase (peptide deformylase)



3D structures of EC 3.5.1.88 - peptide deformylase in Protein Data Bank

updated: 29 October 2020, 11:13

In total: 147 PDB structures of EC 3.5.1.88 - peptide deformylase:
  1. 1ix1: Crystal Structure of P.aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin
  2. 3oca: Crystal Structure of Peptide Deformylase from Ehrlichia Chaffeensis
  3. 1lm4: Structure of Peptide Deformylase from Staphylococcus Aureus at 1.45 a
  4. 1lm6: Crystal Structure of Peptide Deformylase from Streptococcus Pneumoniae
  5. 1lme: Crystal Structure of Peptide Deformylase from Thermotoga Maritima
  6. 1lqw: Crystal Structure of S.aureus Peptide Deformylase
  7. 1lqy: Crystal Structure of Bacillus Stearothermophilus Peptide Deformylase Complexed with Antibiotic Actinonin
  8. 1lru: Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinonin
  9. 1lry: Crystal Structure of P. Aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin
  10. 1n5n: Crystal Structure of Peptide Deformylase from Pseudomonas Aeruginosa
  11. 3k6l: The Structure of E.coli Peptide Deformylase (pdf) in Complex with Peptidomimetic Ligand Bb2827
  12. 1q1y: Crystal Structures of Peptide Deformylase from Staphylococcus Aureus Complexed with Actinonin
  13. 3g6n: Crystal Structure of an Efpdf Complex with Met-ala-ser
  14. 3g5p: Structure and Activity of Human Mitochondrial Peptide Deformylase, a Novel Cancer Target
  15. 3g5k: Structure and Activity of Human Mitochondrial Peptide Deformylase, a Novel Cancer Target
  16. 1s17: Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors
  17. 1sv2: Crystal Structure of Peptide Deformylase from Leptospira Interrogans (lipdf) at Ph7.5
  18. 1szz: Crystal Structure of Peptide Deformylase from Leptospira Interrogans Complexed with Inhibitor Actinonin
  19. 3e3u: Crystal Structure of Mycobacterium Tuberculosis Peptide Deformylase in Complex with Inhibitor
  20. 3cpm: Plant Peptide Deformylase PDF1B Crystal Structure
  21. 3cmd: Crystal Structure of Peptide Deformylase from Vre-e.faecium
  22. 1v3y: The Crystal Structure of Peptide Deformylase from Thermus Thermophilus Hb8
  23. 1vev: Crystal Structure of Peptide Deformylase from Leptospira Interrogans (lipdf) at Ph6.5
  24. 1vey: Crystal Structure of Peptide Deformylase from Leptospira Interrogans (lipdf) at Ph7.0
  25. 1vez: Crystal Structure of Peptide Deformylase from Leptospira Interrogans(lipdf) at Ph8.0
  26. 1ws0: Structure Analysis of Peptide Deformylase from Bacillus Cereus
  27. 1ws1: Structure Analysis of Peptide Deformylase from Bacillus Cereus
  28. 1xem: High Resolution Crystal Structure of Escherichia Coli Zinc- Peptide Deformylase Bound to Formate
  29. 1xen: High Resolution Crystal Structure of Escherichia Coli Iron- Peptide Deformylase Bound to Formate
  30. 1xeo: High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound to Formate
  31. 1y6h: Crystal Structure of Lipdf
  32. 1zxz: X-ray Structure of Peptide Deformylase from Arabidopsis Thaliana (ATPDF1A); Crystals Grown in Peg-5000 Mme as Precipitant
  33. 1zy0: X-ray Structure of Peptide Deformylase from Arabidopsis Thaliana (ATPDF1A); Crystals Grown in Peg-6000
  34. 1zy1: X-ray Structure of Peptide Deformylase from Arabidopsis Thaliana (ATPDF1A) in Complex with Met-ala-ser
  35. 2ai7: S.pneumoniae Polypeptide Deformylase Complexed with Sb- 485345
  36. 2ai8: E.coli Polypeptide Deformylase Complexed with Sb-485343
  37. 2ai9: S.aureus Polypeptide Deformylase
  38. 2aia: S.pneumoniae Pdf Complexed with Sb-543668
  39. 2aie: S.pneumoniae Polypeptide Deformylase Complexed with Sb- 505684
  40. 2os3: Structures of Actinonin Bound Peptide Deformylases from E. Faecalis and S. Pyogenes
  41. 2os1: Structures of Actinonin Bound Peptide Deformylases from E. Faecalis and S. Pyogenes
  42. 2os0: Structures of Actinonin Bound Peptide Deformylases from E. Faecalis and S. Pyogenes
  43. 2okl: Crystal Structure of Peptide Deformylase 2 with Actinonin from Bacillus Cereus
  44. 2ew5: Structure of Helicobacter Pylori Peptide Deformylase in Complex with Inhibitor
  45. 2ew6: Structure of Helicobacter Pylori Peptide Deformylase in Complex with Inhibitor
  46. 2ew7: Crystal Structure of Helicobacter Pylori Peptide Deformylase
  47. 2kmn: Solution Structure of Peptide Deformylase Complexed with Actinonin
  48. 3l87: The Crystal Structure of Smu.143c from Streptococcus Mutans Ua159
  49. 3m6o: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B)
  50. 3m6p: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) in Complex with Actinonin
  51. 3m6q: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) G41Q Mutant in Complex with Actinonin
  52. 3m6r: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) G41M Mutant in Complex with Actinonin
  53. 3qu1: Peptide Deformylase from Vibrio Cholerae
  54. 3o3j: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) in Complex with Inhibitor 6b
  55. 3pn2: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) (crystallized in Peg-550-mme)
  56. 3pn3: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) in Complex with Inhibitor 21
  57. 3pn4: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) in Complex with Actinonin (crystallized in Peg-550-mme)
  58. 3pn5: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) G41Q Mutant
  59. 3pn6: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) G41M Mutant
  60. 3str: Strep Peptide Deformylase with a Time Dependent Thiazolidine Hydroxamic Acid
  61. 3svj: Strep Peptide Deformylase with a Time Dependent Thiazolidine Amide
  62. 3sw8: Strep Peptide Deformylase with a Time Dependent Dichlorobenzamide- Reverse Hydroxamic Acid
  63. 3u04: Crystal Structure of Peptide Deformylase from Ehrlichia Chaffeensis in Complex with Actinonin
  64. 4al2: Peptide Deformylase (ni-form) with Hydrosulfide
  65. 4al3: Peptide Deformylase (co-form) with Mecaptoethanol
  66. 4eox: X-ray Structure of Polypeptide Deformylase Bound to a Acylprolinamide Inhibitor
  67. 3u7k: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  68. 3u7l: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  69. 3u7m: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  70. 3u7n: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  71. 4az4: E.coli Deformylase with Co(ii) and Hydrosulfide
  72. 4dr9: Crystal Structure of a Peptide Deformylase from Synechococcus Elongatus in Complex with Actinonin
  73. 4dr8: Crystal Structure of a Peptide Deformylase from Synechococcus Elongatus
  74. 4e9a: Structure of Peptide Deformylase Form Helicobacter Pylori in Complex with Inhibitor
  75. 4e9b: Structure of Peptide Deformylase Form Helicobacter Pylori in Complex with Actinonin
  76. 4je6: Crystal Structure of a Human-like Mitochondrial Peptide Deformylase
  77. 4je7: Crystal Structure of a Human-like Mitochondrial Peptide Deformylase in Complex with Actinonin
  78. 4je8: Crystal Structure of a Human-like Mitochondrial Peptide Deformylase in Complex with Met-ala-ser
  79. 4nt8: Formyl-methionine-alanine Complex Structure of Peptide Deformylase from Xanthomoonas Oryzae Pv. Oryzae
  80. 4wxk: Crystal Structure of a Peptide Deformylase from Haemophilus Influenzae
  81. 4wxl: Crystal Structure of a Peptide Deformylase from Haemophilus Influenzae Complex with Actinonin
  82. 5cp0: Mas Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae
  83. 5cpd: Methionine-alanine Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  84. 5cvk: Structure of Xoo1075, a Peptide Deformyase from Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493
  85. 5cvp: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
  86. 5cvq: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae, in Complex with Actinonin
  87. 5cwx: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 134
  88. 5cwy: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryze Pv Oryzae, in Complex with Fragment 83
  89. 5cx0: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae, in Complex with Fragment 322
  90. 5cxj: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
  91. 5cy7: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
  92. 5cy8: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 244
  93. 5e5d: Native Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  94. 5hgw: Crystal Structure of a Peptide Deformylase from Burkholderia Ambifaria
  95. 5i2b: Crystal Structure of a Peptide Deformylase from Burkholderia Ambifaria with Actinonin
  96. 5j46: Crystal Structure of a Peptide Deformylase from Burkholderia Multivorans
  97. 5jex: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae, Crystallized in Imidazole Buffer
  98. 5jey: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae, Crystallized in Cacodylate Buffer
  99. 5jez: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Tripeptide Met-ala-ser
  100. 5jf0: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Tripeptide Met-ala-arg
  101. 5jf1: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Actinonin
  102. 5jf2: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At002
  103. 5jf3: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At018
  104. 5jf4: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At019
  105. 5jf5: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At020
  106. 5jf6: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor 6b (ab47)
  107. 5jf7: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor Smp289
  108. 5jf8: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor Ras358 (21)
  109. 5kob: Crystal Structure of a Peptide Deformylase from Burkholderia Xenovorans
  110. 5t8z: Crystal Structure of a Peptide Deformylase from Burkholderia Multivorans in Complex with Actinonin
  111. 5vcp: Crystal Structure of a Peptide Deformylase from Burkholderia Xenovorans in Complex with Actinonin
  112. 6caz: Crystal Structure of a Peptide Deformylase from Legionella Pneumophila
  113. 6ck7: Crystal Structure of a Peptide Deformylase from Legionella Pneumophila Bound to Actinonin
  114. 6ikt: K1U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  115. 6iky: K2U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  116. 6il0: K3U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  117. 6il2: K4U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  118. 6iy7: E. Coli Peptide Deformylase Crystal Structure Fitted into The Cryo-em Density Map of E. Coli 70s Ribosome in Complex with Peptide Deformylase
  119. 6izi: Crystal Structure of E. Coli Peptide Deformylase and Methionine Aminopeptidase Fitted into The Cryo-em Density Map of The Complex
  120. 6j45: Crystal Structure of E. Coli Peptide Deformylase Enzyme and Chaperone Trigger Factor Fitted into The Cryo-em Density Map of The Complex
  121. 6ow2: X-ray Structure of Polypeptide Deformylase
  122. 6ow7: X-ray Structure of Polypeptide Deformylase with a Piperazic Acid
  123. 6jer: Apo Crystal Structure of Class I Type a Peptide Deformylase from Acinetobacter Baumannii
  124. 6jes: Apo Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  125. 6jet: Actinonin Bound Crystal Structure of Class I Type a Peptide Deformylase from Acinetobacter Baumannii
  126. 6jeu: K1U Bound Crystal Peptide Deformylase from Acinetobacter Baumanii
  127. 6jev: K2U Bound Crystal Structure of Class I Type a Peptide Deformylase from Acinetobacter Baumanii
  128. 6jew: K3U Bound Crystal Peptide Deformylase from Acinetobacter Baumanii
  129. 6jex: K4U Bound Crystal Peptide Deformylase from Acinetobacter Baumanii
  130. 6jf3: Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  131. 6jf4: K1U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  132. 6jf5: K2U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  133. 6jf6: Met-ala-ser Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  134. 6jf7: K3U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  135. 6jf8: K4U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  136. 6jf9: Apo Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  137. 6jfa: Met-ala-ser Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  138. 6jfc: Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  139. 6jfd: K1U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  140. 6jfe: K2U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  141. 6jff: K3U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  142. 6jfg: K1U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  143. 6jfo: Formyl-met-ala-ser Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  144. 6jfq: K2U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  145. 6jfr: K3U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  146. 6jfs: K4U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  147. 6jfn: K4U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
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