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enzyme (lysozyme)

 
Enzymes
  Enzyme classes:
  EC 1: Oxidoreductases
  EC 2: Transferases
  EC 3: Hydrolases
    EC 3.1
    EC 3.2
    EC 3.3
    EC 3.4
    EC 3.5
      EC 3.5.1
        EC 3.5.1.1
        EC 3.5.1.2
        EC 3.5.1.3
        EC 3.5.1.4
        EC 3.5.1.5
        EC 3.5.1.6
        EC 3.5.1.7
        EC 3.5.1.8
        EC 3.5.1.9
        EC 3.5.1.10
        EC 3.5.1.11
        EC 3.5.1.12
        EC 3.5.1.13
        EC 3.5.1.14
        EC 3.5.1.15
        EC 3.5.1.16
        EC 3.5.1.17
        EC 3.5.1.18
        EC 3.5.1.19
        EC 3.5.1.20
        EC 3.5.1.21
        EC 3.5.1.22
        EC 3.5.1.23
        EC 3.5.1.24
        EC 3.5.1.25
        EC 3.5.1.26
        EC 3.5.1.27
        EC 3.5.1.28
        EC 3.5.1.29
        EC 3.5.1.30
        EC 3.5.1.31
        EC 3.5.1.32
        EC 3.5.1.33
        EC 3.5.1.34
        EC 3.5.1.35
        EC 3.5.1.36
        EC 3.5.1.37
        EC 3.5.1.39
        EC 3.5.1.40
        EC 3.5.1.41
        EC 3.5.1.42
        EC 3.5.1.43
        EC 3.5.1.44
        EC 3.5.1.45
        EC 3.5.1.46
        EC 3.5.1.47
        EC 3.5.1.48
        EC 3.5.1.49
        EC 3.5.1.50
        EC 3.5.1.51
        EC 3.5.1.52
        EC 3.5.1.53
        EC 3.5.1.54
        EC 3.5.1.55
        EC 3.5.1.56
        EC 3.5.1.57
        EC 3.5.1.58
        EC 3.5.1.59
        EC 3.5.1.60
        EC 3.5.1.61
        EC 3.5.1.62
        EC 3.5.1.63
        EC 3.5.1.64
        EC 3.5.1.65
        EC 3.5.1.66
        EC 3.5.1.67
        EC 3.5.1.68
        EC 3.5.1.69
        EC 3.5.1.70
        EC 3.5.1.71
        EC 3.5.1.72
        EC 3.5.1.73
        EC 3.5.1.74
        EC 3.5.1.75
        EC 3.5.1.76
        EC 3.5.1.77
        EC 3.5.1.78
        EC 3.5.1.79
        EC 3.5.1.80
        EC 3.5.1.81
        EC 3.5.1.82
        EC 3.5.1.83
        EC 3.5.1.84
        EC 3.5.1.85
        EC 3.5.1.86
        EC 3.5.1.87
        EC 3.5.1.88
        EC 3.5.1.89
        EC 3.5.1.90
        EC 3.5.1.91
        EC 3.5.1.92
        EC 3.5.1.93
        EC 3.5.1.94
        EC 3.5.1.95
        EC 3.5.1.96
        EC 3.5.1.97
        EC 3.5.1.98
      EC 3.5.2
      EC 3.5.3
      EC 3.5.4
      EC 3.5.5
      EC 3.5.99
    EC 3.6
    EC 3.7
    EC 3.8
    EC 3.9
    EC 3.10
    EC 3.11
    EC 3.12
    EC 3.13
  EC 4: Lyases
  EC 5: Isomerases
  EC 6: Ligases
  General information:
  Catalytic mechanism
  Enzyme kinetics
  Inhibitors
  Enzymes in industry

EC 3.5.1.88 - formyl- L- methionyl peptide amidohydrolase (peptide deformylase)



3D structures of EC 3.5.1.88 - peptide deformylase in Protein Data Bank

updated: 14 April 2021, 5:15

In total: 147 PDB structures of EC 3.5.1.88 - peptide deformylase:
  1. 1ix1: Crystal Structure of P.aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin
  2. 6jew: K3U Bound Crystal Peptide Deformylase from Acinetobacter Baumanii
  3. 6jex: K4U Bound Crystal Peptide Deformylase from Acinetobacter Baumanii
  4. 6jfo: Formyl-met-ala-ser Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  5. 3oca: Crystal Structure of Peptide Deformylase from Ehrlichia Chaffeensis
  6. 1lm4: Structure of Peptide Deformylase from Staphylococcus Aureus at 1.45 a
  7. 1lm6: Crystal Structure of Peptide Deformylase from Streptococcus Pneumoniae
  8. 1lme: Crystal Structure of Peptide Deformylase from Thermotoga Maritima
  9. 1lqw: Crystal Structure of S.aureus Peptide Deformylase
  10. 1lqy: Crystal Structure of Bacillus Stearothermophilus Peptide Deformylase Complexed with Antibiotic Actinonin
  11. 1lru: Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinonin
  12. 1lry: Crystal Structure of P. Aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin
  13. 1n5n: Crystal Structure of Peptide Deformylase from Pseudomonas Aeruginosa
  14. 6jes: Apo Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  15. 3k6l: The Structure of E.coli Peptide Deformylase (pdf) in Complex with Peptidomimetic Ligand Bb2827
  16. 1q1y: Crystal Structures of Peptide Deformylase from Staphylococcus Aureus Complexed with Actinonin
  17. 3g6n: Crystal Structure of an Efpdf Complex with Met-ala-ser
  18. 3g5p: Structure and Activity of Human Mitochondrial Peptide Deformylase, a Novel Cancer Target
  19. 3g5k: Structure and Activity of Human Mitochondrial Peptide Deformylase, a Novel Cancer Target
  20. 1s17: Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors
  21. 1sv2: Crystal Structure of Peptide Deformylase from Leptospira Interrogans (lipdf) at Ph7.5
  22. 6jff: K3U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  23. 6jfg: K1U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  24. 1szz: Crystal Structure of Peptide Deformylase from Leptospira Interrogans Complexed with Inhibitor Actinonin
  25. 3e3u: Crystal Structure of Mycobacterium Tuberculosis Peptide Deformylase in Complex with Inhibitor
  26. 6jet: Actinonin Bound Crystal Structure of Class I Type a Peptide Deformylase from Acinetobacter Baumannii
  27. 6jfq: K2U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  28. 3cpm: Plant Peptide Deformylase PDF1B Crystal Structure
  29. 3cmd: Crystal Structure of Peptide Deformylase from Vre-e.faecium
  30. 1v3y: The Crystal Structure of Peptide Deformylase from Thermus Thermophilus Hb8
  31. 1vev: Crystal Structure of Peptide Deformylase from Leptospira Interrogans (lipdf) at Ph6.5
  32. 1vey: Crystal Structure of Peptide Deformylase from Leptospira Interrogans (lipdf) at Ph7.0
  33. 1vez: Crystal Structure of Peptide Deformylase from Leptospira Interrogans(lipdf) at Ph8.0
  34. 1ws0: Structure Analysis of Peptide Deformylase from Bacillus Cereus
  35. 1ws1: Structure Analysis of Peptide Deformylase from Bacillus Cereus
  36. 1xem: High Resolution Crystal Structure of Escherichia Coli Zinc- Peptide Deformylase Bound to Formate
  37. 1xen: High Resolution Crystal Structure of Escherichia Coli Iron- Peptide Deformylase Bound to Formate
  38. 1xeo: High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound to Formate
  39. 6jfs: K4U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  40. 1y6h: Crystal Structure of Lipdf
  41. 6jfd: K1U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  42. 6jfe: K2U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  43. 1zxz: X-ray Structure of Peptide Deformylase from Arabidopsis Thaliana (ATPDF1A); Crystals Grown in Peg-5000 Mme as Precipitant
  44. 1zy0: X-ray Structure of Peptide Deformylase from Arabidopsis Thaliana (ATPDF1A); Crystals Grown in Peg-6000
  45. 1zy1: X-ray Structure of Peptide Deformylase from Arabidopsis Thaliana (ATPDF1A) in Complex with Met-ala-ser
  46. 2ai7: S.pneumoniae Polypeptide Deformylase Complexed with Sb- 485345
  47. 2ai8: E.coli Polypeptide Deformylase Complexed with Sb-485343
  48. 2ai9: S.aureus Polypeptide Deformylase
  49. 2aia: S.pneumoniae Pdf Complexed with Sb-543668
  50. 2aie: S.pneumoniae Polypeptide Deformylase Complexed with Sb- 505684
  51. 6jeu: K1U Bound Crystal Peptide Deformylase from Acinetobacter Baumanii
  52. 6jev: K2U Bound Crystal Structure of Class I Type a Peptide Deformylase from Acinetobacter Baumanii
  53. 2os3: Structures of Actinonin Bound Peptide Deformylases from E. Faecalis and S. Pyogenes
  54. 2os1: Structures of Actinonin Bound Peptide Deformylases from E. Faecalis and S. Pyogenes
  55. 2os0: Structures of Actinonin Bound Peptide Deformylases from E. Faecalis and S. Pyogenes
  56. 2okl: Crystal Structure of Peptide Deformylase 2 with Actinonin from Bacillus Cereus
  57. 2ew5: Structure of Helicobacter Pylori Peptide Deformylase in Complex with Inhibitor
  58. 2ew6: Structure of Helicobacter Pylori Peptide Deformylase in Complex with Inhibitor
  59. 2ew7: Crystal Structure of Helicobacter Pylori Peptide Deformylase
  60. 2kmn: Solution Structure of Peptide Deformylase Complexed with Actinonin
  61. 3l87: The Crystal Structure of Smu.143c from Streptococcus Mutans Ua159
  62. 3m6o: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B)
  63. 3m6p: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) in Complex with Actinonin
  64. 3m6q: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) G41Q Mutant in Complex with Actinonin
  65. 3m6r: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) G41M Mutant in Complex with Actinonin
  66. 3qu1: Peptide Deformylase from Vibrio Cholerae
  67. 6jer: Apo Crystal Structure of Class I Type a Peptide Deformylase from Acinetobacter Baumannii
  68. 3o3j: Crystal Structure of Arabidopsis Thaliana Peptide Deformylase 1b (ATPDF1B) in Complex with Inhibitor 6b
  69. 3pn2: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) (crystallized in Peg-550-mme)
  70. 3pn3: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) in Complex with Inhibitor 21
  71. 3pn4: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) in Complex with Actinonin (crystallized in Peg-550-mme)
  72. 3pn5: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) G41Q Mutant
  73. 3pn6: Crystal Structure of Arabidopsis Thaliana Petide Deformylase 1b (ATPDF1B) G41M Mutant
  74. 3str: Strep Peptide Deformylase with a Time Dependent Thiazolidine Hydroxamic Acid
  75. 3svj: Strep Peptide Deformylase with a Time Dependent Thiazolidine Amide
  76. 3sw8: Strep Peptide Deformylase with a Time Dependent Dichlorobenzamide- Reverse Hydroxamic Acid
  77. 6jfa: Met-ala-ser Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  78. 3u04: Crystal Structure of Peptide Deformylase from Ehrlichia Chaffeensis in Complex with Actinonin
  79. 6ow7: X-ray Structure of Polypeptide Deformylase with a Piperazic Acid
  80. 6ow2: X-ray Structure of Polypeptide Deformylase
  81. 4al2: Peptide Deformylase (ni-form) with Hydrosulfide
  82. 4al3: Peptide Deformylase (co-form) with Mecaptoethanol
  83. 4eox: X-ray Structure of Polypeptide Deformylase Bound to a Acylprolinamide Inhibitor
  84. 3u7k: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  85. 3u7l: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  86. 3u7m: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  87. 3u7n: Crystal Structures of The Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors
  88. 4az4: E.coli Deformylase with Co(ii) and Hydrosulfide
  89. 6j45: Crystal Structure of E. Coli Peptide Deformylase Enzyme and Chaperone Trigger Factor Fitted into The Cryo-em Density Map of The Complex
  90. 6jfc: Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  91. 6izi: Crystal Structure of E. Coli Peptide Deformylase and Methionine Aminopeptidase Fitted into The Cryo-em Density Map of The Complex
  92. 6iy7: E. Coli Peptide Deformylase Crystal Structure Fitted into The Cryo-em Density Map of E. Coli 70s Ribosome in Complex with Peptide Deformylase
  93. 6il2: K4U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  94. 6il0: K3U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  95. 6iky: K2U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  96. 6ikt: K1U Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  97. 6jfr: K3U Bound Crystal Structure of Class II Peptide Deformylase from Methicillin Resistant Staphylococcus Aureus
  98. 4dr9: Crystal Structure of a Peptide Deformylase from Synechococcus Elongatus in Complex with Actinonin
  99. 4dr8: Crystal Structure of a Peptide Deformylase from Synechococcus Elongatus
  100. 4e9a: Structure of Peptide Deformylase Form Helicobacter Pylori in Complex with Inhibitor
  101. 4e9b: Structure of Peptide Deformylase Form Helicobacter Pylori in Complex with Actinonin
  102. 6ck7: Crystal Structure of a Peptide Deformylase from Legionella Pneumophila Bound to Actinonin
  103. 6caz: Crystal Structure of a Peptide Deformylase from Legionella Pneumophila
  104. 6jf9: Apo Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  105. 4je6: Crystal Structure of a Human-like Mitochondrial Peptide Deformylase
  106. 4je7: Crystal Structure of a Human-like Mitochondrial Peptide Deformylase in Complex with Actinonin
  107. 4je8: Crystal Structure of a Human-like Mitochondrial Peptide Deformylase in Complex with Met-ala-ser
  108. 6jfn: K4U Bound Crystal Structure of Class I Type B Peptide Deformylase from Pseudomonas Aeruginosa
  109. 6jf3: Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  110. 6jf4: K1U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  111. 6jf5: K2U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  112. 6jf6: Met-ala-ser Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  113. 6jf7: K3U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  114. 6jf8: K4U Bound Crystal Structure of Class I Type B Peptide Deformylase from Acinetobacter Baumannii
  115. 5vcp: Crystal Structure of a Peptide Deformylase from Burkholderia Xenovorans in Complex with Actinonin
  116. 4nt8: Formyl-methionine-alanine Complex Structure of Peptide Deformylase from Xanthomoonas Oryzae Pv. Oryzae
  117. 5t8z: Crystal Structure of a Peptide Deformylase from Burkholderia Multivorans in Complex with Actinonin
  118. 5kob: Crystal Structure of a Peptide Deformylase from Burkholderia Xenovorans
  119. 5jf8: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor Ras358 (21)
  120. 5jf7: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor Smp289
  121. 5jf6: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor 6b (ab47)
  122. 5jf5: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At020
  123. 5jf4: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At019
  124. 5jf3: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At018
  125. 5jf2: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Inhibitor At002
  126. 5jf1: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Actinonin
  127. 5jf0: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Tripeptide Met-ala-arg
  128. 5jez: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae in Complex with Tripeptide Met-ala-ser
  129. 5jey: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae, Crystallized in Cacodylate Buffer
  130. 5jex: Crystal Structure of Type 2 Pdf from Streptococcus Agalactiae, Crystallized in Imidazole Buffer
  131. 5j46: Crystal Structure of a Peptide Deformylase from Burkholderia Multivorans
  132. 5i2b: Crystal Structure of a Peptide Deformylase from Burkholderia Ambifaria with Actinonin
  133. 5hgw: Crystal Structure of a Peptide Deformylase from Burkholderia Ambifaria
  134. 5e5d: Native Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  135. 5cy8: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 244
  136. 5cy7: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
  137. 5cxj: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
  138. 5cx0: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae, in Complex with Fragment 322
  139. 5cwy: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryze Pv Oryzae, in Complex with Fragment 83
  140. 5cwx: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 134
  141. 5cvq: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae, in Complex with Actinonin
  142. 5cvp: Structure of Xoo1075, a Peptide Deformylase from Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
  143. 5cvk: Structure of Xoo1075, a Peptide Deformyase from Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493
  144. 5cpd: Methionine-alanine Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv. Oryzae
  145. 5cp0: Mas Complex Structure of Peptide Deformylase from Xanthomonas Oryzae Pv Oryzae
  146. 4wxk: Crystal Structure of a Peptide Deformylase from Haemophilus Influenzae
  147. 4wxl: Crystal Structure of a Peptide Deformylase from Haemophilus Influenzae Complex with Actinonin
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